Publications

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37. J. Flowers, S. He, N. Ivanova, S. Yilmaz, D. R. Noguera, K. D. McMahon (200_) "Denitrification capabilities of two enhanced biological phosphorus removal sludges dominated by different 'Candidatus Accumulibacter' clades" In review.

36. S. E. Jones, K. D. McMahon (200_) "Species sorting may explain an apparent minimal effect of immigration on freshwater bacterial communities" In revision.

35. S. He, V. Kunin, M. Haynes, H. Garcia Martin, N. Ivanova, F. Rohwer, P. Hugenholtz, K. D. McMahon. "Metatranscriptomic array analysis of Candidatus Accumulibacter phosphatis-enriched enhanced biological phosphorus removal sludge." In revision.

34. E. E. Seyfried, R. J. Newton, K. F. Rubert IV, J. A. Pedersen, K. D. McMahon. (200_) "Tetracycline resistance genes in aquaculture facilities with varying use of oxytetracycline" In revision.

33. I. S. Gil, W. Sheldon, T. Schmidt, M. Servilla, R. Aguilar, C. Gries, T. Gray, D. Field, J. Cole, J. Y. Pan, G. Palanisamy, D. Henshaw, M. O'Brien, L. Kinkel, K. McMahon, R. Kottman, J. Brunt, W. Michener. (2008) "Defining linkages between the GSC and NSF's LTER program: how does the ecological metadata language relate to GCDML and other outcomes" OMICS: A journal of Integrative Biology, 12(2):151-156.

32. S. Brook Peterson, F. Warnecke, J. Madejska, K. D. McMahon, P. Hugenholtz. (2008) "Environmental distribution and population biology of Candidatus Accumulibacter, a primary agent of biological phosphorus removal." Environmental Microbiology, 10(10):2692-2703.

31. G. T. Hinckley, K. D. McMahon, D. McKenzie, J. M. Aiken, C. H. Benson, J. A. Pedersen. (2008) "Survival of pathological prion protein during simulated wastewater treatment processes." Environmental Science and Technology, 42(14):5254-5259.

30. S. E. Jones, T. K. Kratz, C.-Y. Chiu, K. D. McMahon (200_) “Typhoon disturbance patterns drive annual CO2 flux to the atmosphere from a sub-tropical, humic lake." Global Change Biology, In press.

29. A. Shade, S. E. Jones, K. D. McMahon. (2008) "Habitat heterogeneity as a driver of aquatic bacterial community structure and dynamics." Environmental Microbiology, 10(4):1057-1067.

28. S. E. Jones, R. J. Newton, K. D. McMahon. (2008) "Potential for atmospheric deposition of bacteria to influence bacterioplankton communities." FEMS Microbiology Ecology, 64:388-394. PDF.

27. C.-Y. Chiu, S. E. Jones, T. K. Kratz, J.-T. Wu, A. Shade, K. D. McMahon. (2008) "Typhoons initiate predictable change in aquatic bacterial communities" Limnology and Oceanography, 53:1319-1326.

26. R. J. Newton, S. E. Jones, M. R. Helmus, K. D. McMahon (2007) “The phylogenetic ecology of the freshwater acI lineage.” Applied and Environmental Microbiology, 73(22):7169-7176. PDF.

25. V. Kunin, S. He. F. Warnecke, S. B. Peterson, H. Garcia Martin, M. Haynes, N. Ivanova, L. L. Blackall, M. Breitbart, Forest Rohwer, K. D. McMahon, P. Hugenholtz. (2008) “A bacterial metapopulation adapts locally to phage predation despite global dispersal” Genome Research, 18:293-297.

24. S. He, A. Z. Gu, K. D. McMahon. (2008) “Progress towards understanding the distribution of Accumulibacter among full-scale enhanced biological phosphorus removal systems” Microbial Ecology, 55(2):229-236. PDF.

23. S. He, D. L. Gall, K. D. McMahon. (2007) "Accumulibacter population structure in enhanced biological phosphorus removal sludges revealed by polyphosphate kinase genes." Applied and Environmental Microbiology, 73(18):5865-5874. PDF.

22. K. D. McMahon, S. Yilmaz, S. He, D. L. Gall, D. Jenkins, J. D. Keasling. (2007) "Polyphosphate kinase genes from full-scale activated sludge plants" Applied Microbiology and Biotechnology, 77(1):167-173. PDF.

21. K. D. McMahon, H. Garcia Martin, P. Hugenholtz. (2007) "Integrating ecology into biotechnology" Current Opinion in Biotechnology. 18(3):287-292. PDF

20. A. D. Kent, A. C. Yannarell, J. A. Rusak, E. W. Triplett, K. D. McMahon. (2007) "Synchrony in aquatic microbial communities" The ISME Journal: 1:38-47. PDF

19. S. R. Carpenter, B. J. Benson, R. Biggs, J. W. Chipman, J. A. Foley, S.A. Golding, R.B. Hammer, P. C. Hanson, P. T. J. Johnson, A. M. Kamarainen, T. K. Kratz, R. C. Lathrop, K. D. McMahon, B. Provencher, J. A. Rusak, C. T. Solomon, E. H. Stanley, M.G. Turner, M. J. Vander Zanden, C.-H. Wu and H. Yuan. (2007). “Understanding regional change:  Comparison of two lake districts.” BioScience. 57:323-335. PDF

18. E. A. Auerbach, E. E. Seyfried, K. D. McMahon. (2007) "Tetracycline resistance genes in activated sludge wastewater treatment plants" Water Research. 41:1143-1151. PDF

17. S. E. Jones, A. L. Shade, K. D. McMahon, A. D. Kent. (2007) "Comparison of primer sets for use in automated ribosomal intergenic spacer analysis (ARISA) of aquatic bacterial communities: An ecological perspective" Applied and Environmental Microbiology 73(2):659-662. PDF

16. A. Shade, A. D. Kent, S. E. Jones, R. J. Newton, E. W. Triplett, K. D. McMahon. (2007) “Inter-annual dynamics and phenology of bacterial communities in a eutrophic lake.” Limnology and Oceanography 52(2):487-494. PDF

15. T. C. Balser, K. D. McMahon, D. Bronson, D. R. Coyle, N. Craig, M. L. Flores-Mangual, K. Forshay, S. E. Jones, A. D. Kent, A. L. Shade (2006). “Bridging the gap between micro- and macro-scale perspectives on ecosystem response to disturbance” Plant and Soil, 289(1-2):59-70. PDF

14. H. Garcia Martin, N. Ivanova, V. Kunin, F. Warnecke, K. Barry, A. C. McHardy, C. Yeates, S. He, A. Salamov, E. Szeto, E. Dalin, N. Putnam, H. J. Shapiro, J. L. Pangilinan, I. Rigoutsos, N. C. Kyrpides, L. L. Blackall, K. D. McMahon, P. Hugenholtz. (2006) "Metagenomic analysis of phosphorus removing sludge communities." Nature Biotechnology, 24:1263-1269. News and Views, same issue PDF

13. J. A. Pedersen, K. D. McMahon, C. H. Benson. (2006) "Prions: Novel pathogens of environmental concern?" Journal of Environmental Engineering, 132(9):967-969. PDF

12. A. D. Kent, S. E. Jones, G. H. Lauster, J. M Graham, R. J. Newton, K. D. McMahon. (2006) "Experimental manipulations of microbial food web interactions in a humic lake: shifting drivers of bacterial community structure" Environmental Microbiology, 8(8):1448-1459. PDF

11. R. J. Newton, A.D. Kent, E.W. Triplett, and K.D. McMahon. (2006) "Microbial community dynamics in a humic lake: differential persistence of common freshwater phylotypes" Environmental Microbiology, 8(6):956-970. PDF

10. S. He, A. Gu, K. D. McMahon (2006) "Fine-scale differences between Accumulibacter-like bacteria in enhanced biological phosphorus removal activated sludge." Water Science and Technology, 54(1):111-117. PDF

9. K. D. McMahon, D. Zheng, A. J. M. Stams, D. Boone, R. I. Mackie and L. Raskin. (2004) "Microbial Population Dynamics During Startup and Overload Conditions of Anaerobic Digesters Treating Municipal Solid Waste and Sewage Sludge." Biotechnology and Bioengineering, 87(7):823-834. PDF

8. K. D. McMahon, M. D. Dojka, N. R. Pace, D. Jenkins, J. D. Keasling. (2002) "Polyphosphate kinase from activated sludge performing enhanced biological phosphorus removal." Applied and Environmental Microbiology. 68 (10):4971-4978. PDF

7. K. D. McMahon, D. Jenkins, J. D. Keasling. (2002) "Polyphosphate kinase genes from activated sludge carrying out enhanced biological phosphorus removal" Water Science and Technology, 46 (1-2):155-162. PDF

6. N. Renninger, K. D. McMahon, R. Knopp, H. Nitsche, D. S. Clark, and J. D. Keasling. (2002) "Uranyl precipitation by biomass from an enhanced biological removal reactor" Biodegradation, 12:401-410.

5. P. G. Stroot, K. D. McMahon, R. I. Mackie, L. Raskin, (2001) "Anaerobic co-digestion of municipal solid waste and biosolids under various mixing conditions - I. Performance Data" Water Research. 35 (7):1804-1816. PDF

4. K. D. McMahon, P. G. Stroot, R. I. Mackie, L. Raskin, (2001) "Anaerobic co-digestion of municipal solid waste and biosolids under various mixing conditions - II. Microbial population dynamics" Water Research. 35 (7):1817-1827. PDF

3. J. D. Keasling, S. J. Van Dien, P. Trelstad, N. Renninger, K. McMahon, (2000) "Application of polyphosphate metabolism to environmental and biotechnological problems." Biochemistry (Moscow). 65 (3): 324-331.

2. K. D. McMahon, D. A. Stahl, L. Raskin, (1998) "A comparison of in vitro transcribed rRNA and native rRNA for the quantification of microorganisms in environment." Microbial Ecology. 36 (3): 362-371. PDF

1. M. E. Griffin, K. D. McMahon, R. I. Mackie, L. Raskin, (1998) "Methanogenic population dynamics during startup of anaerobic digesters treating municipal solid waste and biosolids." Biotechnology and Bioengineering. 57 (3): 342-355. PDF


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Last Modified: June 2008